Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs7620853 chr3:48666503 G/A 0.000106 111 15.73 11.68 0 KM Plot
LAML rs76254895 chr6:134277578 A/G 0.000187 108 16.2 10.13 1 KM Plot
LAML rs76305699 chr6:134309568 G/A 0.000105 108 16.17 9.12 1 KM Plot
LAML rs76351345 chr16:67776716 C/G 8.37E-5 111 13.2 16.3 0 KM Plot
LAML rs76370770 chr11:34295366 G/A 0.000118 111 13.2 16.3 0 KM Plot
LAML rs76408976 chr2:238384784 C/T 0.000152 109 13.15 18.25 0 KM Plot
LAML rs76446482 chr13:111041200 G/T 0.000141 109 15.7 14.67 0 KM Plot
LAML rs76468062 chr1:95398039 G/T 9.48E-5 111 13.1 22.83 0 KM Plot
LAML rs7661584 chr4:187125102 G/C 7.6E-5 110 13.1 27.88 0 KM Plot
LAML rs76757240 chr13:114606156 C/T 6.12E-7 109 13.1 18.28 0.5 KM Plot
LAML rs76778371 chr6:160418050 G/A 2.31E-5 109 12.18 39.05 0 KM Plot
LAML rs76833598 chr1:95393981 G/A 9.48E-5 111 13.1 22.83 0 KM Plot
LAML rs76990047 chr6:34504042 T/G 6.5E-5 110 16.27 8.1 0 KM Plot
LAML rs76995083 chr7:135617773 G/A 8.34E-5 110 13.1 27.93 0 KM Plot
LAML rs7702486 chr5:25970835 T/A 0.000145 111 0 16.17 15.17 KM Plot